SubtiBank SubtiBank
cspR [2019-07-25 10:22:10]
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cspR [2019-07-25 10:22:10]

similar to tRNA (Um34/Cm34) methyltransferase
locus
BSU_08930
pI
6.05
mw
18.44 kDa
protein length
160 aa Sequence Blast
gene length
483 bp Sequence Blast
function
translation
product
tRNA (Um34/Cm34) methyltransferase homolog
essential
no
ec
2.1.1.-
synonyms
ygaR,trmL
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.8|tRNA modification and maturation]

    • Gene

    Coordinates
    970,135 970,617

    Phenotypes of a mutant

  • essential [Pubmed|12682299], non-essential according to [Pubmed|28189581]

    • The protein

    Catalyzed reaction/ biological activity

  • catalyzes the methyl transfer from S-adenosyl-L-methionine to tRNA(Leu)(CAA) and tRNA(Leu)(UAA) isoacceptors [Pubmed|23804755]

    • Protein family

  • [SW|Methyltransferase superfamily] (according to UniProt)
  • class IV-like SAM-binding methyltransferase superfamily (with [protein|8CB595F84D00D1262EB13E6CF47BE6F00EDE16A5|YacO] and [protein|8A2898B80D0FFA56C5AA86C6F09D886A62AABBDA|YsgA], according to UniProt)

    • Structure

  • [PDB|4JAK] (from ''E. coli'', 45% identity, 72% similarity) [Pubmed|23804755]

    • Expression and Regulation

    Operons

    genes
    [gene|506BD8F55C235CCCF5045073AEC93D8B1E4FB8DF|yhbB]-[gene|03BA7AEE17739689D632A35D9C3329EA0982C98A|cspR]
    description
    [Pubmed|12662922]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|12662922], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]

    • regulation

  • ''[SW|yhbB]-[SW|cspR]'': expressed in the mother cell early during [SW|sporulation] ([SW|SigE]) [Pubmed|12662922]
    • view in new tab

    genes
    [gene|03BA7AEE17739689D632A35D9C3329EA0982C98A|cspR]
    description
    [Pubmed|22383849]

    regulation

  • ''[SW|yhbB]-[SW|cspR]'': expressed in the mother cell early during [SW|sporulation] ([SW|SigE]) [Pubmed|12662922]
    • view in new tab

    Biological materials

    Mutant

  • BKE08930 ([gene|03BA7AEE17739689D632A35D9C3329EA0982C98A|cspR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE08930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCTCTGTTTTTCTTATCC, downstream forward: _UP4_TAGTGAAAAACCCGCTCATC
  • BKK08930 ([gene|03BA7AEE17739689D632A35D9C3329EA0982C98A|cspR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK08930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCTCTGTTTTTCTTATCC, downstream forward: _UP4_TAGTGAAAAACCCGCTCATC

    • References

  • 23804755,12662922,22383849,28189581